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Issue: Vol.17 No.2 - July 2023
Prevalence and antimicrobial susceptibility of high-level gentamicin resistant enterococci isolated from urine at a hospital in Pune, India
Authors:
Nageswari R. Gandham
Nageswari R. Gandham
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Shahzad Mirza
Shahzad Mirza
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Chanda Vyawahare
Chanda Vyawahare
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Rajashri Patil
Rajashri Patil
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Sahjid Mukhida
Sahjid Mukhida
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Sriram Kannuri
Sriram Kannuri
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

,
Shalini Bhaumik
Shalini Bhaumik
Affiliations

Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India

Abstract

Introduction: Enterococci are one of the common organisms isolated from hospitalized patients with urinary tract infections. Guidelines recommend testing enterococcifor susceptibility to high-level gentamicin (HLG) and streptomycin. The present study was planned to determine the susceptibility of uropathogenic enterococci to high-level gentamicin in a tertiary care hospital.

Materials and Methods: Prospective observational research was carried out at a tertiary care hospital for two years on all isolated enterococci from urine specimens. Identification and antibiotic susceptibility were performed as per standard methods. All the isolated enterococci were tested for high level gentamicin ((120µg) resistance and susceptibility to other recommended antimicrobial agents by standard methods.

Results: A total of 320 uropathogenic enterococci were isolated and tested for antibiotic susceptibility. The majority of enterococci were isolated from elderly (34.06%) and admitted patients (69.06%). A total of 68.4% isolated enterococci were HLG resistant. HLG resistant enterococci were highly resistant to erythromycin (96.3%), ciprofloxacin (96.8%) and nalidixic acid (97.7%). Enterococci sensitive to HLG were significantly (p <0.05) less resistant to the other antimicrobial agents except nalidixic acid. Only 20.5% isolated Enterococci were resistant to vancomycin. All isolated enterococci were susceptible to linezolid.

Conclusion: The study demonstrated high prevalence of HLG resistant enterococci causing UTI in our hospital setting. Compared to HLG sensitive enterococci, HLG resistant enterococci were more resistant to other antimicrobial agents tested. The findings highlight the need for mandatory testing of enterococci for HLG resistance to determine effective antimicrobials for treatment.

IMC J Med Sci. 2023; 17(2):008. DOI: https://doi.org/10.55010/imcjms.17.018

*Correspondence: Dr. Sahjid Mukhida, Department of Microbiology, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, Maharashtra, India. E-mail: [email protected]

 

Introduction

Enterococci, a Gram-positive facultative anaerobic catalase-negative cocci, are one of the common organisms responsible for hospital-associated infections (HAI) in healthcare settings [1,2]. The majority of enterococci are isolated from individuals with bacteremia, urinary tract infection (UTI), infective endocarditis, and occasionally meningitis [3]. Enterococci are capable of producing biofilm, enhancing adhesion in urinary catheters, artificial heart valves, and dental prostheses [4]. Among all uropathogens identified from urine specimens, enterococci are the second most common [5].

Isolation of organisms from clinical specimens is pointless unless antibiotic susceptibility is performed. Clinical Laboratory Standard Institute (CLSI) guideline is useful for assessing antibiotic susceptibility in enterococcus [6]. Beta-lactam, macrolides, fluoroquinolones, glycolipopeptides, and linezolid are commonly used antibiotics for enterococci. Few drugs namely aminoglycosides, cephalosporins, cotrimoxazole, and clindamycin though effective on gram-positive organisms are not effective on enterococcus because enterococci are intrinsically resistant to them [6]. However, aminoglycosides can be used in combination with bacterial cell wall biosynthesis inhibitor drugs such as penicillin, ampicillin or vancomycin [7]. Only gentamicin and streptomycin are recommended for combination use in enterococcal infection to have the synergistic effects while other aminoglycosides are not used in this application [8,9].

CLSI guidelines recommend testing enterococcal species for susceptibility to high-level gentamicin (HLG) and streptomycin from the aminoglycoside group because their mechanisms of action differ from other aminoglycosides and are effective drugs in combination with other drugs or alone at higher doses than the standard therapeutic dose [4]. Several studies reported high prevalence of enterococci in urinary tract infections [9-12].

The present study investigated the susceptibility of uropathogenic enterococci to high-level gentamicin at a tertiary care hospital. Also, the study evaluated susceptibility patterns of various antibiotics in the context of high-level gentamicin resistance in enterococci.

 

Materials and method

Prospective observational research was carried out at a tertiary care medical college hospital for two years, from December 2020 to November 2022. The study included all urine specimens with significant (105 CFU/ml) growth of enterococci from patients with features of urinary tract infection. Other specimens and uropathogens were not included in the investigation. The study was approved by the institutional Ethical sub-committee before the study was initiated. Approval was granted by letter no: I.E.S.C./154/2022 dated 12 November 2022. Written informed consent was taken from patients or their attendants regarding sample testing, their results, and further use of results for research purposes.

Samples were inoculated on Cystine Lactose Electrolyte Deficient (CLED) agar plate with a calibrated single-loop wire. Culture plates were incubated at 37oC for 18-24 hours. Following incubation, culture plates were examined for growth of enterococci. Only significant colony-forming units (105/ml or more) were considered pathogenic. Suspected colonies were confirmed using a Gram stain smear and other standard biochemical tests. Catalase and bile esculin tests were performed for identification of enterococci [13]. Antibiotic susceptibility testing was performed on cation-adjusted Muller Hilton agar by Kirby Bauer disc diffusion method. Following discs were used: erythromycin (15µg), ciprofloxacin (5µg), vancomycin (10µg), linezolid (30µg), ampicillin (10µg), and gentamicin (120µg). Lawn culture was performed and the above discs were placed on a lawn-cultured plate. Culture plates were incubated at 37ºC for 18-24 hours. Antibiotic susceptibility was interpreted using current CLSI guidelines M-100 (2021 and 2022) [6,14].

Enterococcus faecalis ATCC 29212 and Enterococcus casseliflavis ATCC 700327 were used as the quality control strains. From time-to-time QC strain was checked by disc diffusion as well as automation to maintain the quality of the test and study.

 

Results

During the study period, a total of 320 enterococci were isolated and tested for HLG susceptibility by the Kirby Bauer disc diffusion method. Out of 320 isolates, 68.4% were resistant to HLG. Of the total isolates, 158 (49.37%) were from male and 162 (50.6%) were female patients. The highest numbers of enterococci were isolated from 41-60 years age group (34.1%) followed by the 21-40 years (29.1%) and above 60 years (24.4%) age groups (Table-1).

 

Table-1: Distribution of high level gentamicin (HLG) resistant and susceptible enterococci according to the gender, age, location and speciality (n=320)

 

 

During the study period, specimens were received from out and in patients departments and ICU. The highest number of specimens was received from admitted patients (69.1%) but the highest HLG resistant enterococci were found in samples from ICU-admitted patients (78.5%). Among all the patients, the majority of the specimens were received from the medicine department (34.7%) followed by urology department (22.8%). However, the highest HLG resistant enterococci were isolated in samples from patients of pediatric ward (85.2%) followed by patients from surgery (76.2%) and critical care medicine (76%). Details are shown in Table-1.

Table-2 shows the susceptibility of HLG resistant and sensitive enterococci isolates to several antimicrobial agents tested. Except resistance to nalidixic acid, HLG resistant enterococci were significantly (p< 0.05) more resistant to ampicillin, erythromycin, nitrofurantoin and vancomycin compared HLG sensitive isolates. Overall, 15% enterococci were resistant to vancomycin. All the isolated enterococci were sensitive to linezolid.

 

Table-2: Susceptibility of HLG resistant and sensitive enterococci isolates to antimicrobial agents tested

 

 

Discussion

Drug-resistant enterococci play a significant role in hospital acquired infections. Detection of HLG resistance in enterococci is important for successful management of infection. With this background, the current study was planned.

In the present study, there was no significant difference of isolation rate of enterococci from urine samples of male and female cases. Several Indian and international studies also reported almost similar rates (52.3% to 59.7%) of enterococcal infection in male and female patients [15-19]. However, these studies were conducted with blood, urine and others clinical specimens while the current study was conducted only on urine specimens.

In the current study, 89.4% of isolates were from the admitted patients which include 69.1% from wards and 20.3% from ICU admitted patients and the findings were comparable to other reported studies [15,20,21]. Age can play a major role in causing urinary infections. Elderly patients are more prone to acquire UTIs. In the current study more than half of the UTI patients (55.8%) with enterococcal was above the age of 40 years. Other studies also reported similar rates [15,19].

Several studies investigated the magnitude of HLG resistance in enterococci isolated from different clinical samples. In our study 68.4% enterococcal isolates from urine was HLG-resistant. Studies from different regions of India and other countries also reported the rates from 41% to 86.2% [6,8,12,13,16,17,20-25]. In our study, resistance against other commonly used antibiotics was found significantly higher in HLG resistant enterococci compared HLG sensitive isolates. Similar results were also reported by Dadfarma N et al, specifically for penicillin, ciprofloxacin, and erythromycin [11]. Overall, the resistance against ampicillin, quinolones, macrolides and nitrofurantoin was high in our isolates. Several other studies also reported almost similar resistance rate in enterococci [12,16-20,22-24,26,27].

Vancomycin is used to treat infections due to methicillin resistant S. aureus (MRSA) and enterococci. In our series, overall 15% of the enterococci was resistant to vancomycin, but the rate was significantly higher in HLG resistant than that of sensitive enterococci (20.5% vs. 2.9%). Several earlier studies reported the resistance to vancomycin from 12% to about 37% [12,19,20,23,24,26]. Linezolid is increasingly used to treat infections due to vancomycin resistant and sensitive enterococci. Recently, resistance to linezolid has been reported by many studies. The reported resistance to linezolid varied from 0.5% to 4% [12,19,23,24]. However, in the current study, all the enterococci isolates were susceptible to linezolid.

The present study had some limitations. The organism could not be identified up to the species level and minimum inhibitory concentrations (MIC) for the tested antibiotics were not done due to limited resources. Occurrence of high rates (68%) of HLG resistant enterococci in the present study highlights the need for testing and reporting enterococci for HLG resistance.

 

Acknowledgement

The authors would like to thank Dr. S. L. Jadhav, Professor and his PG Resident Dr. Deepu Palal, Department of Community Medicine, Dr. D. Y. Patil Medical College, Hospital and Research Centre, Dr. D. Y. Patil Vidyapeeth, Pimpri, Pune, India for helping in statistical analysis of the work.

 

Conflict of interest

None of the author has conflict of interest.

 

Fund

The study did not receive any grant from any funding agencies.

 

References

1.     Goel V, Kumar D, Kumar R, Mathur P, Singh S. Community acquired enterococcal urinary tract infections and antibiotic resistance profile in North India. J Lab Physicians. 2016; 8: 50-54.

2.     Angadi K, Jadhav S, Misra RN, Mirza SB, Desai D. Incidence and antimicrobial susceptibility of enterococcal infections in tertiary care hospital. Int J Microbiol Res. 2018; 10(4): 1135-38.

3.     Hashem YA, Amin HM, Essam TM, Yassin AS, Aziz RK. Biofilm formation in Enterococci: genotype-phenotype correlations and inhibition by vancomycin. Sci Rep. 2017; 7(1): 5733. Doi: 10.1038/s41598-017-05901-0.

4.     Emaneini M, Khoramian B, Jabalameli F, Beigverdi R, Asadollahi K, Taherikalani M, et al. Prevalence of high-level gentamicin-resistant Enterococcus faecalis and Enterococcus faecium in an Iranian hospital. J Prev Med Hyg. 2016; 57(4): E197-E200.

5.     Naruka HS, Chand AE, Meena H. Prevalence of various enterococcus species and their antibiotic resistance pattern among urinary isolates in tertiary care center in South Eastern Rajasthan. IP Int J Med Microbiol Trop Dis. 2019; 5(1): 18-22.

6.     CLSI, Performance Standards for Antimicrobial Susceptibility Testing; 31st edition. CLSI Supplement M100. Clinical Laboratory Standard Institute, Wayne, PA: CLSI; 2021.

7.     Nishimoto Y, Kobayashi N, Alam MM, Ishino M, Uehara N, Watanabe N. Analysis of the prevalence of tetracycline resistance genes in clinical isolates of Enterococcus faecalis and Enterococcus faecium in a Japanese hospital. Microb Drug Resist. 2005; 11: 146–153.

8.     del Campo R, Tenorio C, Rubio C, Castillo J, Torres C, Gómez-Lus R. Aminoglycoside-modifying enzymes in high-level streptomycin and gentamicin resistant Enterococcus spp. in Spain. Int J Antimicrob Agents. 2000; 15(3): 221-6. Doi: 10.1016/s0924-8579(00)00169-2.

9.     Shete V, Grover N, Kumar M. Analysis of aminoglycoside modifying enzyme genes responsible for high-level aminoglycoside resistance among enterococcal isolates. J Pathog. 2017; 2017: 3256952. Doi: 10.1155/2017/3256952.

10.  Mathur P, Kapil A, Chandra R, Sharma P, Das B. Antimicrobial resistance in Enterococcus faecalis at a tertiary care centre of northern India. Indian J Med Res. 2003; 118:25–28.

11.  Dadfarma N, Fooladi AAI, Oskoui M, Hosseini HM, High level of gentamicin resistance (HLGR) among enterococcus strains isolated from clinical specimens. J Infect Public Health. 2013; 6(3): 202-208.

12.  Das AK, Dudeja M, Kohli S, Ray P, Nandy S. High-level gentamicin resistance mediated by Aac(6′)-Ie-aph(2”)-Ia gene in Enterococcus species isolated from clinical samples in Northern India. Indian J Pharmacol. 2022; 54: 171-176.

13.  CLSI, Performance Standards for Antimicrobial Susceptibility Testing; 32nd edition. CLSI Supplement M100. Clinical Laboratory Standard Institute, Wayne, PA: CLSI; 2022.

14.  Winn, W., Allen, S., Janda, W., Koneman, E., Procop, G., Schreckenberger, P. and Woods, G. Koneman’sColor Atlas and Textbook of Diagnostic Microbiology. 7th Edition, Lippincott Williams and Wilkins, New York. 2016.

15.  Georges M, Odoyo E, Matano D, Tiria F, Kyany’a C, Mbwika D, et al. Determination of Enterococcus faecalis and Enterococcus faecium antimicrobial resistance and virulence factors and their association with clinical and demographic factors in Kenya. J Pathog. 2022; 2022: 3129439. Doi: 10.1155/2022/3129439.

16.  Adesida SA, Ezenta CC, Adagbada AO, Aladesokan AA, Coker AO. Carriage of multidrug resistant Enterococcus faecium and Enterococcus faecalis among apparently healthy humans. Afr J Infect Dis. 2017; 11(2): 83-89. Doi: 10.21010/ajid.v11i2.11.

17.  Sumangala B, Sharlee R, Sahana Shetty N S. Identification of Enterococcus faecalis and E faecium among enterococci isolated from clinical samples in a teaching hospital Mandya Institute of Medical Sciences, Mandya. Indian J Microbiol Res. 2020; 7(3): 284-287.

18.  Ahmad S, Alotaibi H, Alkhaibari S, Alshahrani B. Enterococcal urinary tract infection in newborns at a Pediatric Hospital in Saudi Arabia. Dhaka Univ J Pharm Sci. 2020; 19: 119-124.

19.  Rana D, Sande S. Study of prevalence and antimicrobial susceptibility pattern of Enterococci isolated from clinically relevant samples with special reference to high Level aminoglycoside resistance (HLAR) in a rural tertiary care hospital. J Evolution Med Dent Sci. 2020; 9(34): 2472-2478. DOI: 10.14260/jemds/2020/537.

20.  Meena S, Mohapatra S, Sood S, Dhawan B, Das BK, Kapil A. Revisiting nitrofurantoin for vancomycin resistant enterococci. J Clin of Diagn Res. 2017; 11(6): DC19-DC22. doi.org/10.7860/JCDR/2017/25140/10140.

21.  Billington EO, Phang SH, Gregson DB, Pitout JD, Ross T, Church DL, et al. Incidence, risk factors, and outcomes for Enterococcus spp. blood stream infections: a population-based study. Int J Infect Dis. 2014; 26: 76-82. Doi: 10.1016/j.ijid.2014.02.012.

22.  El-Mahdy R, Mostafa A, El-Kannishy G. High-level aminoglycoside resistant enterococci in hospital-acquired urinary tract infections in Mansoura, Egypt. Germs. 2018; 8(4): 186-190. Doi: 10.18683/germs.2018.1145.

23.  Bhatt P, Patel A, Sahni AK, Praharaj AK, Grover N, Chaudhari CN, Das NK, Kulkarni M. Emergence of multidrug-resistant enterococci at a tertiary care centre. Med J Armed Forces India. 2015; 71(2): 139-144.

24.  Moussa AA, Md Nordin AF, Hamat RA, Jasni AS. High level aminoglycoside resistance and distribution of the resistance genes in Enterococcus faecalis and Enterococcus faecium from teaching hospital in Malaysia. Infect Drug Resist. 2019; 12: 3269-3274. Doi: 10.2147/IDR.S219544.

25.  Mittal S, Singla P, Deep A, Bala K, Sikka R, Garg M, et al. Vancomycin and high-level aminoglycoside resistance in Enterococcus spp. In a tertiary health care centre: A therapeutic concern. J Pathog. 2016; 2016: 8262561.

26.  Purohit G, Gaind R, Dawar R, Verma PK, Aggarwal KC, Sardana R, et al. Characterization of vancomycin-resistant Enterococci in hospitalized patients and role of gut colonization. J Clin Diagn Res. 2017; 11: C01-5.

27.  Rezaee MA, Abdinia B. Etiology and antimicrobial susceptibility pattern of pathogenic bacteria in children subjected to UTI: a referral hospital-based study in Northwest of Iran. Medicine (Baltimore). 2015; 94(39): e1606. Doi: 10.1097/MD.0000000000001606.

 

  

Cite this article as:

Gandham NR, Mirza S, Vyawahare C, Patil R, Mukhida S, Kannuri S, BhaumikS. Prevalence and antimicrobial susceptibility of high-level gentamicin resistant enterococci isolated from urine at a hospital in Pune, India. IMC J Med Sci. 2023; 17(2):008. DOI: https://doi.org/10.55010/imcjms.17.018